Instance -> Data.

src/main/org/insa/algo/AbstractAlgorithm.java

@@ -1,4 +1,4 @@
-package org.insa.algo ;
+package org.insa.algo;
 
 import java.time.Duration;
 import java.time.Instant;
@@ -6,17 +6,25 @@ import java.util.ArrayList;
 
 public abstract class AbstractAlgorithm<Observer> {
 
-    protected AbstractData instance;
+    protected AbstractInputData data;
     protected ArrayList<Observer> observers;
 
-    protected AbstractAlgorithm(AbstractData instance) {
-		this.instance = instance;
-		this.observers = new ArrayList<Observer>();	
+    /**
+     * @param data
+     */
+    protected AbstractAlgorithm(AbstractInputData data) {
+        this.data = data;
+        this.observers = new ArrayList<Observer>();
     }
 
-    protected AbstractAlgorithm(AbstractData instance, ArrayList<Observer> observers) {
-    		this.instance = instance;
-    		this.observers = observers;;	
+    /**
+     * @param data
+     * @param observers
+     */
+    protected AbstractAlgorithm(AbstractInputData data, ArrayList<Observer> observers) {
+        this.data = data;
+        this.observers = observers;
+        ;
     }
 
     /**
@@ -25,20 +33,22 @@ public abstract class AbstractAlgorithm<Observer> {
      * @param observer
      */
     public void addObserver(Observer observer) {
-    		observers.add(observer);
+        observers.add(observer);
     }
 
     /**
      * @return The list of observers for this algorithm.
      */
     public ArrayList<Observer> getObservers() {
-    		return observers;
+        return observers;
     }
 
     /**
      * @return Instance corresponding to this algorithm.
      */
-    public AbstractData getInputData() { return instance; }
+    public AbstractInputData getInputData() {
+        return data;
+    }
 
     /**
      * Run the algorithm and update the current solution.
@@ -46,10 +56,10 @@ public abstract class AbstractAlgorithm<Observer> {
      * @return true if a feasible solution was found (even non-optimal).
      */
     public AbstractSolution run() {
-    		Instant start = Instant.now();
-    		AbstractSolution solution = this.doRun();
-    		solution.setSolvingTime(Duration.between(start, Instant.now()));
-    		return solution;
+        Instant start = Instant.now();
+        AbstractSolution solution = this.doRun();
+        solution.setSolvingTime(Duration.between(start, Instant.now()));
+        return solution;
     }
 
     /**

src/main/org/insa/algo/AbstractData.java

@@ -1,20 +0,0 @@
-package org.insa.algo;
-
-import org.insa.graph.Graph;
-
-public abstract class AbstractData {
-
-	protected Graph graph;
-	
-	/**
-	 * Create a new abstract instance with the given graph.
-	 * 
-	 * @param graph
-	 */
-	protected AbstractData(Graph graph) {
-		this.graph = graph;
-	}
-	
-	public Graph getGraph() { return graph; }
-	
-}

src/main/org/insa/algo/AbstractInputData.java

@@ -0,0 +1,22 @@
+package org.insa.algo;
+
+import org.insa.graph.Graph;
+
+public abstract class AbstractInputData {
+
+    protected Graph graph;
+
+    /**
+     * Create a new AbstractInputData instance with the given graph.
+     * 
+     * @param graph
+     */
+    protected AbstractInputData(Graph graph) {
+        this.graph = graph;
+    }
+
+    public Graph getGraph() {
+        return graph;
+    }
+
+}

src/main/org/insa/algo/AbstractSolution.java

@@ -4,71 +4,74 @@ import java.time.Duration;
 
 public abstract class AbstractSolution {
 
-	/**
-	 * Possible status for a solution.
-	 *
-	 */
-	public enum Status {
-		UNKNOWN,
-		INFEASIBLE,
-		FEASIBLE,
-		OPTIMAL,
-	};
+    /**
+     * Possible status for a solution.
+     *
+     */
+    public enum Status {
+        UNKNOWN, INFEASIBLE, FEASIBLE, OPTIMAL,
+    };
 
-	// Status of the solution.
-	Status status;
+    // Status of the solution.
+    Status status;
 
-	// Solving time for the solution
-	Duration solvingTime;
+    // Solving time for the solution.
+    Duration solvingTime;
 
-	// Original instance of the solution
-	AbstractData instance;
+    // Original input of the solution.
+    AbstractInputData data;
 
-	/**
-	 * Create a new abstract solution with unknown status.
-	 * 
-	 * @param instance
-	 */
-	protected AbstractSolution(AbstractData instance) {
-		this.instance = instance;
-		this.solvingTime = Duration.ZERO;
-		this.status = Status.UNKNOWN;
-	}
+    /**
+     * Create a new abstract solution with unknown status.
+     * 
+     * @param data
+     */
+    protected AbstractSolution(AbstractInputData data) {
+        this.data = data;
+        this.solvingTime = Duration.ZERO;
+        this.status = Status.UNKNOWN;
+    }
 
-	protected AbstractSolution(AbstractData instance, Status status) {
-		this.instance = instance;
-		this.status = status;
-	}
+    protected AbstractSolution(AbstractInputData data, Status status) {
+        this.data = data;
+        this.status = status;
+    }
 
-	/**
-	 * @return Original instance for this solution.
-	 */
-	public AbstractData getInputData() { return instance; }
+    /**
+     * @return Original input for this solution.
+     */
+    public AbstractInputData getInputData() {
+        return data;
+    }
 
-	/**
-	 * @return Status of this solution.
-	 */
-	public Status getStatus() { return status; }
+    /**
+     * @return Status of this solution.
+     */
+    public Status getStatus() {
+        return status;
+    }
 
-	/**
-	 * @return Solving time of this solution.
-	 */
-	public Duration getSolvingTime() { return solvingTime; }
+    /**
+     * @return Solving time of this solution.
+     */
+    public Duration getSolvingTime() {
+        return solvingTime;
+    }
 
-	/**
-	 * Set the solving time of this solution.
-	 * 
-	 * @param solvingTime Solving time for the solution.
-	 */
-	protected void setSolvingTime(Duration solvingTime) {
-		this.solvingTime = solvingTime;
-	}
+    /**
+     * Set the solving time of this solution.
+     * 
+     * @param solvingTime Solving time for the solution.
+     */
+    protected void setSolvingTime(Duration solvingTime) {
+        this.solvingTime = solvingTime;
+    }
 
-	/**
-	 * @return true if the solution is feasible or optimal.
-	 */
-	public boolean isFeasible() {
-		return status == Status.FEASIBLE || status == Status.OPTIMAL;
-	}
+    /**
+     * @return true if the solution is feasible or optimal.
+     */
+    public boolean isFeasible() {
+        return status == Status.FEASIBLE || status == Status.OPTIMAL;
+    }
 
 }

src/main/org/insa/algo/strongconnectivity/StronglyConnectedComponentsAlgorithm.java

@@ -1,26 +1,25 @@
-package org.insa.algo.strongconnectivity ;
+package org.insa.algo.strongconnectivity;
 
 import org.insa.algo.AbstractAlgorithm;
 
-public abstract class StronglyConnectedComponentsAlgorithm extends AbstractAlgorithm<StronglyConnectedComponentObserver> {
+public abstract class StronglyConnectedComponentsAlgorithm
+        extends AbstractAlgorithm<StronglyConnectedComponentObserver> {
 
-	/**
-	 * 
-	 * @param instance
-	 * @param logOutput
-	 */
-	public StronglyConnectedComponentsAlgorithm(StronglyConnectedComponentsData instance) {
-		super(instance);
-	}
+    /**
+     * @param data
+     */
+    public StronglyConnectedComponentsAlgorithm(StronglyConnectedComponentsData data) {
+        super(data);
+    }
 
-	@Override
-	public StronglyConnectedComponentsSolution run() {
-		return (StronglyConnectedComponentsSolution)super.run();
-	}
+    @Override
+    public StronglyConnectedComponentsSolution run() {
+        return (StronglyConnectedComponentsSolution) super.run();
+    }
 
-	@Override
-	public StronglyConnectedComponentsData getInputData() {
-		return (StronglyConnectedComponentsData)super.getInputData();
-	}
+    @Override
+    public StronglyConnectedComponentsData getInputData() {
+        return (StronglyConnectedComponentsData) super.getInputData();
+    }
 
 }

src/main/org/insa/algo/strongconnectivity/StronglyConnectedComponentsData.java

@@ -1,9 +1,9 @@
 package org.insa.algo.strongconnectivity;
 
-import org.insa.algo.AbstractData;
+import org.insa.algo.AbstractInputData;
 import org.insa.graph.Graph;
 
-public class StronglyConnectedComponentsData extends AbstractData {
+public class StronglyConnectedComponentsData extends AbstractInputData {
 
 	/**
 	 * 

src/main/org/insa/algo/strongconnectivity/StronglyConnectedComponentsSolution.java

@@ -10,13 +10,13 @@ public class StronglyConnectedComponentsSolution extends AbstractSolution {
     // Components
     private ArrayList<ArrayList<Node>> components;
 
-    protected StronglyConnectedComponentsSolution(StronglyConnectedComponentsData instance) {
-        super(instance);
+    protected StronglyConnectedComponentsSolution(StronglyConnectedComponentsData data) {
+        super(data);
     }
 
-    protected StronglyConnectedComponentsSolution(StronglyConnectedComponentsData instance, Status status,
-            ArrayList<ArrayList<Node>> components) {
-        super(instance, status);
+    protected StronglyConnectedComponentsSolution(StronglyConnectedComponentsData data,
+            Status status, ArrayList<ArrayList<Node>> components) {
+        super(data, status);
         this.components = components;
     }
 

src/main/org/insa/algo/strongconnectivity/TarjanAlgorithm.java

@@ -11,134 +11,134 @@ import org.insa.graph.Node;
 
 public class TarjanAlgorithm extends StronglyConnectedComponentsAlgorithm {
 
-	private final static int UNDEFINED = -1;
+    private final static int UNDEFINED = -1;
 
-	// Stack of nodes and flags.
-	private Stack<Node> stack;
-	private boolean[] inStack;
+    // Stack of nodes and flags.
+    private Stack<Node> stack;
+    private boolean[] inStack;
 
-	// Current index.
-	private int index;
+    // Current index.
+    private int index;
 
-	// Information of nodes
-	private int[] indexes;
-	private int[] lowlink;	
+    // Information of nodes
+    private int[] indexes;
+    private int[] lowlink;
 
-	// Array of strongly connected components
-	ArrayList<ArrayList<Node>> components;
+    // Array of strongly connected components
+    ArrayList<ArrayList<Node>> components;
 
-	public TarjanAlgorithm(StronglyConnectedComponentsData instance) {
-		super(instance);
-	}
+    public TarjanAlgorithm(StronglyConnectedComponentsData data) {
+        super(data);
+    }
 
-	/**
-	 * Push the given node to the stack.
-	 * 
-	 * @param node
-	 */
-	protected void pushNode(Node node) {
-		stack.push(node);
-		inStack[node.getId()] = true;
-	}
+    /**
+     * Push the given node to the stack.
+     * 
+     * @param node
+     */
+    protected void pushNode(Node node) {
+        stack.push(node);
+        inStack[node.getId()] = true;
+    }
 
-	/**
-	 * Pop and return a node from the stack.
-	 * 
-	 * @return Node popped from the stack
-	 */
-	protected Node popNode() {
-		Node top = stack.pop();
-		inStack[top.getId()] = false;
-		return top;
-	}
+    /**
+     * Pop and return a node from the stack.
+     * 
+     * @return Node popped from the stack
+     */
+    protected Node popNode() {
+        Node top = stack.pop();
+        inStack[top.getId()] = false;
+        return top;
+    }
 
-	/**
-	 * Check if the given node is in the stack.
-	 * 
-	 * @param node
-	 * 
-	 * @return true if the given node is in the stack, false otherwize.
-	 */
-	protected boolean isInStack(Node node) {
-		return inStack[node.getId()];
-	}
+    /**
+     * Check if the given node is in the stack.
+     * 
+     * @param node
+     * 
+     * @return true if the given node is in the stack, false otherwize.
+     */
+    protected boolean isInStack(Node node) {
+        return inStack[node.getId()];
+    }
 
-	/**
-	 * Find the strong component containing the given node.
-	 * 
-	 * @param node 
-	 * 
-	 * @return The strong component containing the given node.
-	 */
-	protected void findAndAddStrongComponent(Node v) {
+    /**
+     * Find the strong component containing the given node.
+     * 
+     * @param node
+     * 
+     * @return The strong component containing the given node.
+     */
+    protected void findAndAddStrongComponent(Node v) {
 
-		// Update node info, index and push the node.
-		indexes[v.getId()] = index;
-		lowlink[v.getId()] = index;
-		index += 1;
-		pushNode(v);
+        // Update node info, index and push the node.
+        indexes[v.getId()] = index;
+        lowlink[v.getId()] = index;
+        index += 1;
+        pushNode(v);
 
-		for (Arc a: v.getSuccessors()) {
-			Node w = a.getDestination();
-			if (!hasBeenVisited(w)) {
-				findAndAddStrongComponent(w);
-				lowlink[v.getId()] = Math.min(lowlink[v.getId()], lowlink[w.getId()]);
-			}
-			else if (isInStack(w)) {
-				lowlink[v.getId()] = Math.min(lowlink[v.getId()], indexes[w.getId()]);
-			}
-		}
+        for (Arc a: v.getSuccessors()) {
+            Node w = a.getDestination();
+            if (!hasBeenVisited(w)) {
+                findAndAddStrongComponent(w);
+                lowlink[v.getId()] = Math.min(lowlink[v.getId()], lowlink[w.getId()]);
+            }
+            else if (isInStack(w)) {
+                lowlink[v.getId()] = Math.min(lowlink[v.getId()], indexes[w.getId()]);
+            }
+        }
 
-		// Compute the component (if any)
-		if (lowlink[v.getId()] == indexes[v.getId()]) {
-			ArrayList<Node> component = new ArrayList<Node>();
-			Node w;
-			do {
-				w = popNode();
-				component.add(w);
-			} while (!w.equals(v));
-			components.add(component);
-			System.out.println("Size of the stack: " + stack.size());
-		}
+        // Compute the component (if any)
+        if (lowlink[v.getId()] == indexes[v.getId()]) {
+            ArrayList<Node> component = new ArrayList<Node>();
+            Node w;
+            do {
+                w = popNode();
+                component.add(w);
+            } while (!w.equals(v));
+            components.add(component);
+            System.out.println("Size of the stack: " + stack.size());
+        }
 
-	}
+    }
 
-	/**
-	 * Check if the given node has not been visited yet.
-	 * 
-	 * @return true if the node has been visited.
-	 */
-	protected boolean hasBeenVisited(Node node) { 
-		return this.indexes[node.getId()] != UNDEFINED;
-	}
+    /**
+     * Check if the given node has not been visited yet.
+     * 
+     * @return true if the node has been visited.
+     */
+    protected boolean hasBeenVisited(Node node) {
+        return this.indexes[node.getId()] != UNDEFINED;
+    }
 
-	@Override
-	protected StronglyConnectedComponentsSolution doRun() {
-		Graph graph = getInputData().getGraph();
+    @Override
+    protected StronglyConnectedComponentsSolution doRun() {
+        Graph graph = getInputData().getGraph();
 
-		components = new ArrayList<ArrayList<Node>>();
+        components = new ArrayList<ArrayList<Node>>();
 
-		// Initialize everything
-		final int nbNodes = graph.getNodes().size();
-		stack = new Stack<Node>();
-		inStack = new boolean[nbNodes];
+        // Initialize everything
+        final int nbNodes = graph.getNodes().size();
+        stack = new Stack<Node>();
+        inStack = new boolean[nbNodes];
 
-		// Current index.
-		index = 0;
+        // Current index.
+        index = 0;
 
-		// Information of nodes
-		indexes = new int[nbNodes];
-		Arrays.fill(indexes, UNDEFINED);
-		lowlink = new int[nbNodes];
+        // Information of nodes
+        indexes = new int[nbNodes];
+        Arrays.fill(indexes, UNDEFINED);
+        lowlink = new int[nbNodes];
 
-		// Find components
-		for (Node node: graph.getNodes()) {
-			if (!hasBeenVisited(node)) {
-				findAndAddStrongComponent(node);
-			}
-		}
+        // Find components
+        for (Node node: graph.getNodes()) {
+            if (!hasBeenVisited(node)) {
+                findAndAddStrongComponent(node);
+            }
+        }
 
-		return new StronglyConnectedComponentsSolution(getInputData(), Status.OPTIMAL, components);
-	}
+        return new StronglyConnectedComponentsSolution(getInputData(), Status.OPTIMAL, components);
+    }
 
 }

src/main/org/insa/algo/weakconnectivity/WeaklyConnectedComponentsAlgorithm.java

@@ -13,15 +13,14 @@ import org.insa.graph.Arc;
 import org.insa.graph.Graph;
 import org.insa.graph.Node;
 
-public class WeaklyConnectedComponentsAlgorithm extends AbstractAlgorithm<WeaklyConnectedComponentObserver> {
+public class WeaklyConnectedComponentsAlgorithm
+        extends AbstractAlgorithm<WeaklyConnectedComponentObserver> {
 
     /**
-     * 
-     * @param instance
-     * @param logOutput
+     * @param data
      */
-    public WeaklyConnectedComponentsAlgorithm(WeaklyConnectedComponentsData instance) {
-        super(instance);
+    public WeaklyConnectedComponentsAlgorithm(WeaklyConnectedComponentsData data) {
+        super(data);
     }
 
     @Override
@@ -70,7 +69,7 @@ public class WeaklyConnectedComponentsAlgorithm extends AbstractAlgorithm<Weakly
 
     /**
      * @return An adjacency list for the undirected graph equivalent to the stored
-     *         graph.
+     * graph.
      */
     protected ArrayList<HashSet<Integer>> createUndirectedGraph() {
         int nNodes = getInputData().getGraph().getNodes().size();

src/main/org/insa/algo/weakconnectivity/WeaklyConnectedComponentsData.java

@@ -1,9 +1,9 @@
 package org.insa.algo.weakconnectivity;
 
-import org.insa.algo.AbstractData;
+import org.insa.algo.AbstractInputData;
 import org.insa.graph.Graph;
 
-public class WeaklyConnectedComponentsData extends AbstractData {
+public class WeaklyConnectedComponentsData extends AbstractInputData {
 
 	/**
 	 * 

src/main/org/insa/algo/weakconnectivity/WeaklyConnectedComponentsSolution.java

@@ -10,13 +10,13 @@ public class WeaklyConnectedComponentsSolution extends AbstractSolution {
     // Components
     private ArrayList<ArrayList<Node>> components;
 
-    protected WeaklyConnectedComponentsSolution(WeaklyConnectedComponentsData instance) {
-        super(instance);
+    protected WeaklyConnectedComponentsSolution(WeaklyConnectedComponentsData data) {
+        super(data);
     }
 
-    protected WeaklyConnectedComponentsSolution(WeaklyConnectedComponentsData instance, Status status,
+    protected WeaklyConnectedComponentsSolution(WeaklyConnectedComponentsData data, Status status,
             ArrayList<ArrayList<Node>> components) {
-        super(instance, status);
+        super(data, status);
         this.components = components;
     }
 

src/main/org/insa/graphics/MainWindow.java

@@ -617,9 +617,8 @@ public class MainWindow extends JFrame {
         wccItem.addActionListener(baf.createBlockingAction(new ActionListener() {
             @Override
             public void actionPerformed(ActionEvent e) {
-                WeaklyConnectedComponentsData instance = new WeaklyConnectedComponentsData(graph);
                 WeaklyConnectedComponentsAlgorithm algo = new WeaklyConnectedComponentsAlgorithm(
-                        instance);
+                        new WeaklyConnectedComponentsData(graph));
                 algo.addObserver(new WeaklyConnectedComponentGraphicObserver(drawing));
                 algo.addObserver(new WeaklyConnectedComponentTextObserver(printStream));
                 launchThread(new Runnable() {